input graphs

synthetic-0.zip

synthetic-1.zip

synthetic-2.zip

gavin.zip

ito.zip

GO matrices - IGNORE for part I

synthetic-1-mat.zip

synthetic-2-mat.zip

gavin-matrix.zip

ito-matrix.zip

Clustering

If you use this clustering, you probably need to also write a function to read this file in. The function should skip the first line, which is used for cytoscape, and then split all other lines by the equals sign. The right side is the cluster number and the left side is the node name.

gavin-out-na.txt

ito-out-na.txt