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cs190c:project4 [2008/04/07 08:39]
seh
cs190c:project4 [2008/04/07 08:41] (current)
seh
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 Submit a file called ''​my_graph_operations.py''​ along with a folder containing your discussion and graph visualization files. ​ Make sure this material is organized well (e.g., one subfolder per graph) and files of visuals have names that clearly identify what they represent. ​ Here is a template on how the operations may be used to help you test your code  {{cs190c:​my_graph_operations.py|}}. Submit a file called ''​my_graph_operations.py''​ along with a folder containing your discussion and graph visualization files. ​ Make sure this material is organized well (e.g., one subfolder per graph) and files of visuals have names that clearly identify what they represent. ​ Here is a template on how the operations may be used to help you test your code  {{cs190c:​my_graph_operations.py|}}.
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   * Read the graph and generate G, generate the reduced graph GR, generate the undirected version GRU.  This was included in part 1.   * Read the graph and generate G, generate the reduced graph GR, generate the undirected version GRU.  This was included in part 1.
   * Perform mcl_clustering on GRU, compute coverage and performance of the clustering and show both quantities in a plot.  Visualize the clustering in Cytoscape and save an image. ​   * Perform mcl_clustering on GRU, compute coverage and performance of the clustering and show both quantities in a plot.  Visualize the clustering in Cytoscape and save an image. ​
-  * Generate the weighted, complete graph w_complete_CC and produce the multi boxplot and the visualization of good and bad edges (described in detail further up).  Prepare a description on the qualities of the cluster+  * Generate the weighted, complete graph w_complete_CC and produce the multi boxplot and the visualization of good and bad edges (described in detail further up).  Prepare a description on the qualities of the clustering with respect to know protein interactions
  
 ===== Extra Credit ​ ===== ===== Extra Credit ​ =====
 
cs190c/project4.txt ยท Last modified: 2008/04/07 08:41 by seh
 
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